TIGEM | Bioinformatics Core

Tools & Utilities

External Tools

STRING (Protein-Protein Interaction)
DAVID (Functional Annotation)
Jaspar (A database of transcription factor binding profiles)
Ensembl (A genome browser for vertebrate genomes)
Phosphorylation Site (The Kinase Library)
Transfac (TRANScription FACtor database)

Internal Tools

qPCR Tool
TFEB
Mantra2.0
DSEA
Gene2Drug
CheMantra
miRetina
Retina
Proteomics
Dina
Netview
Cometa

Heatmap
SingleCell

Curated Gene Lists

Glutathione Transferase Activity
Autophagy
Cytoskeleton
Endocytosis-Transport genes
Glutathione Transferase Activity
Golgi apparatus and TRANS-Golgi network
LSDs
LysoAutophagy
Lysosomal and LSD genes
Lysosomal Localization Genes
Macroautophagy
Macromitophagy
Mitochondral Related
Mitophagy
Neuronal Genes
Organization And Biogenesis Mitochondrial
Photoreceptors Genes
RABs
Ras Signaling Pathway
TF
Custom Intestinal
Custom GPCR
Hippo Signaling Pathway
Peroxisome
PPAR Signaling Pathway
WNT Signaling Pathway
ECM Genes Cardiac Issues Related